Basic Information | |
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Taxon OID | 3300010352 Open in IMG/M |
Scaffold ID | Ga0116247_10270629 Open in IMG/M |
Source Dataset Name | AD_JPHWca |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1372 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Japan | |||||||
Coordinates | Lat. (o) | 35.92 | Long. (o) | 139.63 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F055381 | Metagenome | 138 | N |
F058854 | Metagenome | 134 | N |
Protein ID | Family | RBS | Sequence |
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Ga0116247_102706292 | F055381 | N/A | MKLLLKLLFILPALAAAGSSIREVYLPPWYDNASFQTFEIEIKDLPVHYVQLDHPCTLFCTNQVVMVSNGTARARLLIDLKKTPATFPIIVMAPDANGRMTPRQKLICHLSLVPLPIQVEVRDDTFTVTNLTEEPFELERTEAVNITSQDDRHIAGTLTGSGRLKLKGRAEIRLNPKPGSGGPG* |
Ga0116247_102706293 | F058854 | N/A | TSARKSEAEIIDHLNARWQGCAWQANRLELSGLTYQGALFPLITQGPGAFSLPSGAFVLRLHVLPLNARDNEPILVLWGRIADPRDKPLARLFLRKGRLVWVCPIDAKADSLFDASKDVELETQELTPGLWATVDVLINPLPYQQTFGWNLEMNHPQDPAKPSGKPLHLARQLTSADWAPQKIEMPRLHAAWLGQMELLPSDTPQAQLRPNILRQ* |
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