Scaffold Ga0116247_10160701

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0116247_10160701

Scaffold Ga0116247_10160701

Overview

Basic Information
Taxon OID	3300010352 Open in IMG/M
Scaffold ID	Ga0116247_10160701 Open in IMG/M
Source Dataset Name	AD_JPHWca
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1899
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	35.92	Long. (^o)	139.63	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060548	Metagenome	132	Y
F071903	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116247_101607012	F071903	AGGAGG	MNRTEQATARHEAELQEALGHLEYFKRTALALDQAMKVMAKDLQVCKKNEQIWEKRIEKLQEKA*
Ga0116247_101607013	F060548	AGGAG	MKIPMMVTNRPKQHRVTDFVDMQAAMLVRNHASEELCIEDLVDAAKRDMPNFEWNNDKIRHSVDRLEKRGKIASKYVIRRKRLCRVPYPI*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.