NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116247_10160701

Scaffold Ga0116247_10160701


Overview

Basic Information
Taxon OID3300010352 Open in IMG/M
Scaffold IDGa0116247_10160701 Open in IMG/M
Source Dataset NameAD_JPHWca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1899
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)35.92Long. (o)139.63Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060548Metagenome132Y
F071903Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0116247_101607012F071903AGGAGGMNRTEQATARHEAELQEALGHLEYFKRTALALDQAMKVMAKDLQVCKKNEQIWEKRIEKLQEKA*
Ga0116247_101607013F060548AGGAGMKIPMMVTNRPKQHRVTDFVDMQAAMLVRNHASEELCIEDLVDAAKRDMPNFEWNNDKIRHSVDRLEKRGKIASKYVIRRKRLCRVPYPI*

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