Scaffold Ga0116247_10092544

Overview

Basic Information

• Taxon OID: 3300010352
• Scaffold ID: Ga0116247_10092544
• Source Dataset Name: AD_JPHWca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2672
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 35.92
  • Long. (^o): 139.63

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069433	Metagenome / Metatranscriptome	124	N
F072819	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116247_100925442	F072819	N/A	MVMRMFQDQVKAQEVSFRIAWLEGENAVSELVSWCRNNLDELTVQCFTHKRFMSVQALVDVLCEVYRDLGVEGDKGNVSVFVLFLAGKHRDKIYASHVVDLNDTHRQILRDKLGLDIEEIEPGLSKLDWRADAGI*
Ga0116247_100925443	F069433	AGGAG	MAHKMPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNTEFVRRGLTQASFTDPTITALVTEIRKVHVDQLRTELSACKSGRGESGYCPQDSSGCMDFTDPTITALSTEVRGIHFRQMMQKVQLLMSGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECQYSINHYWNCASINLPSSAEHPYKSANPPVAWDGYVPWDWCVYTPPGSNWGTCEYSGGHNHSAWNCKCNPYSW*