Scaffold Ga0116248_10278330

Overview

Basic Information

• Taxon OID: 3300010351
• Scaffold ID: Ga0116248_10278330
• Source Dataset Name: AD_USPNca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1312
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 39.88
  • Long. (^o): -75.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016798	Metagenome / Metatranscriptome	244	Y
F030054	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116248_102783301	F016798	AGGAG	MKKFILILVLLTLVSCEKEFKELQRSYVISNFIELNDDLDYKLIYFCDKYNAFEHFYDIKHTIYNEIGEHNYYKDMQSRMAVVSHTKDTGTCQFQHKTFYYLAKKYNLNNANILNESHQIAVIVQSFADGKKNWWYGYKKYKNSIEYN*
Ga0116248_102783302	F030054	N/A	MNSREKKLFFAVLVLLAVFLFNLESIKKKNNIINTNKELINSYKERINSSNLAIDSLQNAIKQAKKVDTIIKYRYKQKIDSIYVYKQSDYISFYDSLLHTNLQKSDTFICFDSMSVQKLTTKILHLQQDSELLANCYIQNNLYTNIINIQDSVIMLKDSVNASLEAMYKQKVKKVKKQRNIATSIAFTELLILIGVLAK*