NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116248_10030644

Scaffold Ga0116248_10030644


Overview

Basic Information
Taxon OID3300010351 Open in IMG/M
Scaffold IDGa0116248_10030644 Open in IMG/M
Source Dataset NameAD_USPNca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5971
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin035(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.88Long. (o)-75.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013091Metagenome / Metatranscriptome274Y
F031881Metagenome / Metatranscriptome181Y
F033394Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0116248_100306444F033394N/AMKSIYIYFVDEKADIYYKDNSKNLHCTINLYTNSEHFRDQFRKNLLKHYWDRLEINDIDDLKMIVKDSFVQIFTLQRENFDKDD*
Ga0116248_100306446F031881N/AMKNFEFKINKKITPIRTGENKFKFAIDNSGITNINITQDKIEDVIYSIFDDSEYMDVVKVITNVKGKQKIPKIFLQGAQYSGNGLIPSAGCGFVDTTDLVLNDVDIEVEKLRMGMELCLDDLVNYSFEVHITDGARNEDLDISDALLAYFTQVLRANIQDYLFNDSTNGIIPKLHTGASAATVTAASELGKLLDIYNSLPEGWQNSTKANPIIFISPNLLTSIRGEIFSATAPITSSIEIINNRFKLPLTNASVITLPFLQGTKAYAGISNYLFAGTDLESDFENVRVWYSDDNETIRFSALLYLGSAIADISDFVKYEP*
Ga0116248_100306447F013091AGGAGGMSCKLTNGINLKDCDTPGGVSESYFINIEDVDTLTVTDYQVSALTLKSYSTAYKIAFEPQTSNFASNAVGSVENSSAAYEQACEIKINKIDNNVLKQIDALTKGRHLVIIKKADGTYEMYFHEGGAKFFANYTTGTAFEDPSGVTLTATHRQPSNMLIVSATVIVTLTIAEETV
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