NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116244_10353803

Scaffold Ga0116244_10353803


Overview

Basic Information
Taxon OID3300010350 Open in IMG/M
Scaffold IDGa0116244_10353803 Open in IMG/M
Source Dataset NameAD_HKSTca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)989
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045118Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0116244_103538031F045118N/ALQFSVPKNYYGSNYFSVGEAGTRAALKKVEGELDQSGVFTNLEEADLSRIDTFKNIEPEEPFSSYFSLFSLLKARKAQQRGYGTTFLVANSSQEFCVYDKLQEMREHDLETSNLPETMRFEHRALKKEKVRSLYGFTKVKELFHGGYEVVKEKQVESWKNSLFSFSAEEVLVLGSKQLEQEMKVFQEKFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKREEGSSKTLGELYEELREKVCDLAGRN*
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Institute for Fundamental Biomedical Research
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