Scaffold Ga0116244_10217624

Overview

Basic Information

• Taxon OID: 3300010350
• Scaffold ID: Ga0116244_10217624
• Source Dataset Name: AD_HKSTca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1336
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Hong Kong
• Coordinates
  • Lat. (^o): 22.28
  • Long. (^o): 114.17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015605	Metagenome / Metatranscriptome	253	N
F023356	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116244_102176241	F015605	AGGA	MYNNAVLLQTLQQVRLKVIDTLKLMLSDYEVSPESSLRVQPASYEVATGEKVEYPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGTRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVEGELVQNGVFTNLEEAEISRIDTFKNIEPEEPFSSYFSLFSLLKARRAQQRGY
Ga0116244_102176242	F023356	AGGAG	MSENSLKKAVFESRVSAAEAEVMSTELKKSKVITLRVEEPLFKVIEAQAELWKVKPAETIRRVLRFYFLPVALELELRGESEKFWKGELTPEALREYMIFTLEATGKLSSSALFLKGEASRLSEALEGKLSEALEEEREGAEP*