NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116255_10223314

Scaffold Ga0116255_10223314


Overview

Basic Information
Taxon OID3300010348 Open in IMG/M
Scaffold IDGa0116255_10223314 Open in IMG/M
Source Dataset NameAD_HKYLca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1353
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021262Metagenome / Metatranscriptome219N
F024321Metagenome / Metatranscriptome206N
F033819Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0116255_102233142F021262AGGAGMSKKYYIKFTTGKELTGTAKEIVTQLRNESRLLAITPRKYARLVAKSYEMSTGLKLRTWTYNSFVKSLGKSLMVMEFKEVK*
Ga0116255_102233143F024321GGAGGMLDEILKLIAGMAGLGAFTSMLINLLKVAGLVKDGQADKAFKLADLIVFVIVTVIYLTKTPVDWAQVDEWLVLLTALLGYVVSVFSGEFTHDTIKGTPLIGYSYSEKKLKE*
Ga0116255_102233144F033819GAGMDASEPKQSRVTNTAIQSQLVELSVRLTRMEKDLQEIKSTIFASGEKMNAMEKNEAGQRPLIERRLDNLEKRTDKHEDEIVQLVKITQSLANTNKVLTWVAGLAGAGVLSWLIAQILSLIG*
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