Scaffold Ga0116238_10957419

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116238_10957419

Scaffold Ga0116238_10957419

Overview

Basic Information
Taxon OID	3300010347 Open in IMG/M
Scaffold ID	Ga0116238_10957419 Open in IMG/M
Source Dataset Name	AD_JPHGca
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	514
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	34.72	Long. (^o)	135.27	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071725	Metagenome	122	N
F076577	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116238_109574191	F071725	GGAGG	MNKLLLTKPESEYLGIGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKWQRKEINEVGL
Ga0116238_109574192	F076577	N/A	RRKKMLWPERKVIALMEIAFHYGCLYARKHTGKKRNDLWLAFKIDKLANNLKYINPDPRCTHPVNLDVLDHCWGYAHKIDKGEEIDMNELCNGCEFLSVEAKNEQVAPH*

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