Scaffold Ga0116238_10471600

Overview

Basic Information

• Taxon OID: 3300010347
• Scaffold ID: Ga0116238_10471600
• Source Dataset Name: AD_JPHGca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 802
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → unclassified Corynebacteriales → Corynebacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.72
  • Long. (^o): 135.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038694	Metagenome / Metatranscriptome	165	Y
F049656	Metagenome / Metatranscriptome	146	Y
F067768	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116238_104716001	F049656	GAGG	MDALDRYELLTEPDVRGYVTVKRLADGKTATCKASWLKPAPHSESPAHVMPRSRTKALRM
Ga0116238_104716002	F067768	GAGG	MSILQNEQVQAALIALIVVGLNALAQWLRSKVSHTKIVDEYWCYIQPVAEAMRGEIVKSLEGGTISTTVVGAIVQRALAQFADSFRLNEGRQPTATQIAAVETELVDVAERAIRGK*
Ga0116238_104716003	F038694	N/A	IILQRLERIEAKLDAMQANGCSKAEGHERMHDDVVELFSRIREVERVQAEGRGKLVVIVAILTSAAGLLFEWIGKHLT*