Scaffold Ga0116238_10160293

Overview

Basic Information

• Taxon OID: 3300010347
• Scaffold ID: Ga0116238_10160293
• Source Dataset Name: AD_JPHGca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1619
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.72
  • Long. (^o): 135.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061870	Metagenome / Metatranscriptome	131	N
F074914	Metagenome / Metatranscriptome	119	N
F080087	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116238_101602932	F080087	GGA	MRMQATATVTSASEMEHATAWKTGENEYDVRVPARYREYTCSHRVVAIYRRYGVITDYQYRVTKKELEEIARIVETRIEQTNNKGGQKITPRSAGGLVGAGKK*
Ga0116238_101602933	F061870	N/A	MKRRIQKLETLTAWKALPDASEYIQVWAIDPDQDEAEKWFETRDGKRVTDPKTIERLIAYYNEAVRRGTVNVTARFADYDDPEDTTGNGA*
Ga0116238_101602934	F074914	AGGGGG	MKISTLLRKANAALCKIESLNPEEIDREVFKMEIEKARAIAYLVRTVSEIIAKNEMEDRIAALENALTQERAS*