NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116238_10062213

Scaffold Ga0116238_10062213


Overview

Basic Information
Taxon OID3300010347 Open in IMG/M
Scaffold IDGa0116238_10062213 Open in IMG/M
Source Dataset NameAD_JPHGca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3072
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)34.72Long. (o)135.27Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001938Metagenome / Metatranscriptome614Y
F010244Metagenome / Metatranscriptome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0116238_100622133F010244GGAGGMTYKVKFTHSDKSHAHINRAEVREGKEVYRHPKEYFVVLEFHGAGGKFREAFWPENVEKVG*
Ga0116238_100622134F001938GAGGMIEKIYKKERIVICDNCGEGRVCDSWADAIDFMNEEGWKKKLVDGEWKHFCPECVEVKEP

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