Scaffold Ga0116238_10062038

Overview

Basic Information

• Taxon OID: 3300010347
• Scaffold ID: Ga0116238_10062038
• Source Dataset Name: AD_JPHGca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3079
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.72
  • Long. (^o): 135.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023320	Metagenome / Metatranscriptome	210	N
F087074	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116238_100620382	F087074	GAG	MIEGVYIYRKGGEVIGSPLPAFDDLFLQIESDNTAAGLYFIVDFVNIDSNKKVTIKLYPKIGYNEVETYISQILKNLFNKDFDSFTLNIIAKEYDENGYVSDLFMQFVVIPSIYNSFLPPIKDYFFYYYQSTVDYDILSSRGITLYDDDFNELSDEISIKTSLKNIYKKVGTVYEKIIRIHHKQVCEPLLKLKYLNLHTGYYDEFSGWYIKQDTVNVEKQIYNRQTLKDTGTRQALPELTDEFILISYDLPTDQANYIAKSIIMSPKTFLIDTNGNEMECVVMNKNYTDALNVVNVFANINLNIKL*
Ga0116238_100620383	F023320	N/A	MKEYKALTFEVDLSGLGKEQWIQEELDYDTIAQKLIDTLIDVMREKDVEASSNLIQSLEPETKSGEIVIYADYYWKFIDKGVNGLMQSRDSEFSFKFVPASKKHALSIAKWLEFRGLATEFTTLADAYRIATATKIKGIRGRKFVEEFEKELDKIEII*