Scaffold Ga0116238_10005064

Overview

Basic Information

• Taxon OID: 3300010347
• Scaffold ID: Ga0116238_10005064
• Source Dataset Name: AD_JPHGca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19823
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.72
  • Long. (^o): 135.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092957	Metagenome / Metatranscriptome	107	Y
F096508	Metagenome / Metatranscriptome	104	N
F096520	Metagenome / Metatranscriptome	104	Y
F102391	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116238_1000506418	F102391	GGAGG	MAFMLDADGNIVVDETTGLSKQVTGQQSLEQDAMSECRCEQGGNFTDDTYGRNPLVWKLSQSPADRIADVKRIVSKYYDPYSITYENGIITVD*
Ga0116238_1000506424	F096520	N/A	MAVVGFFRELFHIPAARAANVQESLTVVVGQCVATFTAKLSGESISFGGETFYNEEDLLGDITLDTERGKRHMSADGSRGVLILSLPRAGTREVKFLLGDNLDKLKSWGQAKIQKLFDFDFFYAYNTQSREGARIHRHKNCYFTKMPLAGVGRDRGYVTAEISFEDVAEIDPATDKEI*
Ga0116238_1000506427	F092957	AGGA	MMLRGLQSMAARRYADTTCGVIYNTLTPDDDGSSIVTETVLTLKASIKPLQPVDIKRLREGGIECQEGVSILISEALDERPERIEADGKKWRVLTWSFIPAYENESGNPVGTVVAACEEIRVXXXXX
Ga0116238_100050645	F096508	GGGGG	MKKKRIKPAELLKLLDRHNLQKYDICKICGVSAATAERYIKHGPPEAQFRLIQLSLGDL*