Scaffold Ga0116239_10154261

Overview

Basic Information

• Taxon OID: 3300010346
• Scaffold ID: Ga0116239_10154261
• Source Dataset Name: AD_USMOca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1775
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023098	Metagenome / Metatranscriptome	211	Y
F058173	Metagenome / Metatranscriptome	135	N
F068794	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116239_101542611	F058173	AGGGGG	MKMTYWIVGGIVLAVIAVIAAYSYGRYHPDPDMVGRLTEQIRQETVKQYEKRIADLDKQLKASQTAYIESQKRYDTIIKKIKELKDGKDNIKPPADSAELTARF
Ga0116239_101542612	F068794	GGA	MKKEKGFIFNHKTITIRGSFINTLFTMVLMTLFIVAAFRKEVADNLKMIAELIIAIYAISYGVWQGKKFLENKEKKK*
Ga0116239_101542615	F023098	GAGG	MDERRQNWTCGAHHELVESLRDINQKLDGMIVRQIAYAETSARIEEKQEQIERIVTNGLSHNMANISKRLDIFCDEVKKRLDELEEFQWFRVPITRLRDSIFWYLFKLAAAGGVLYLIIHYGKEMVQGTFK*