Basic Information | |
---|---|
Taxon OID | 3300010346 Open in IMG/M |
Scaffold ID | Ga0116239_10088827 Open in IMG/M |
Source Dataset Name | AD_USMOca |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2611 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA | |||||||
Coordinates | Lat. (o) | 41.53 | Long. (o) | -90.43 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003987 | Metagenome / Metatranscriptome | 458 | Y |
F004383 | Metagenome / Metatranscriptome | 440 | Y |
F085852 | Metagenome / Metatranscriptome | 111 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0116239_100888271 | F085852 | AGGAGG | MSFTPSEVILGATLPLENGSTVTFSIAGRVEGERDYDDAVVIFGRKLLKYTNSASDADRLTVRQVVASITSTPLDKVPDVGTPTSPAPVKEPAKVAPPA |
Ga0116239_100888273 | F003987 | GGAGG | VIPSLPCGTFSDGDTPAGAFYVAAFEDGDQPHHVGEYRIDVVIRALRALQACGYDDVEVGSIERGGKTHLLLTGLDGEARFGDRQIGCIAVLPVGVD* |
Ga0116239_100888274 | F004383 | GGGGG | MPSNDNLLEHAFMARIRADEYREALAALQQEFDERPDVIEIKRRIERCEEERRQCIAQARAAGISKMGNYLLKIRTRKARTVIPKLFFAKHGAEAFVECATIAIGKAEALLGKAALDDCCEVEVKEIGVSVEYVRLEGSE* |
⦗Top⦘ |