Scaffold Ga0116239_10057685

Overview

Basic Information

• Taxon OID: 3300010346
• Scaffold ID: Ga0116239_10057685
• Source Dataset Name: AD_USMOca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3567
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016798	Metagenome / Metatranscriptome	244	Y
F091896	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116239_100576851	F091896	N/A	DSISVQKLTIKLLHLQQDSELLANCYIQNNLYANIINIQDSVISLKDSVNASLETMYKQKVKKVKKQRNVATGIAFTEFLILIGVLAK*
Ga0116239_100576852	F016798	AGGAG	MKKFILILVLLTLVSCEKEFKELQRSYVISNFIELNDDLDYKLIYFCDKYNAFEHFYDIKHTIFNEIGEHNYYKDMQSRMAVVSHTKDTGTCQFQHRTFYYLAEKYDIKGANILSESQQIAIMVQAFRDDKKNYWNGYKKLKKILVE*