Scaffold Ga0116239_10015173

Overview

Basic Information

• Taxon OID: 3300010346
• Scaffold ID: Ga0116239_10015173
• Source Dataset Name: AD_USMOca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9792
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F009968	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116239_1001517313	F004383	AGGAG	MSDVNILERAFMARIRADEYREALAALQQEFDERPDVIDLKRQIERCEEERRQCIEQAKAAGISKQGSFLLKIRTRKQRTVIPERFFARFGAETFVRCSTVAIGKAEALLGKAALDDCCEVEVKEIGVSVEYERPEGSE*
Ga0116239_1001517314	F003987	GGAGG	MIPALPCGTYADSGVPAGAFYVAAFEDGDQTHHVGEYRIETLVRALRALQACGYDDVEVGSIERDGKTHLLLSGLDGEARFGDVQIGCIAVAPVEVE*
Ga0116239_1001517319	F009968	AGGAGG	MSHPHSCIGCRSHYRERHWWIFEIDFCGLDGDVVGFECPIGCIDTRGCSAYERALAWPEGAIA*