Scaffold Ga0116243_10041247

Overview

Basic Information

• Taxon OID: 3300010344
• Scaffold ID: Ga0116243_10041247
• Source Dataset Name: AD_JPASca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4155
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Thermotogae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 43.77
  • Long. (^o): 142.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012026	Metagenome / Metatranscriptome	284	Y
F061870	Metagenome / Metatranscriptome	131	N
F080087	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116243_100412474	F080087	GGA	MRMQATATVTSASEMEHATAWKTSDTEYDVRVPARYREYTCSHRVVAIYRRYGVITDYQYRVTKKELEEIERIVETRIEQTNNKGGQK*
Ga0116243_100412475	F012026	AGGAGG	MNLRELQASIANIIGKRADAVDKLNRLTTIDDRFNPENIVKITAYKQAIEELSKELNRLEVERGALLEAEEAARKEYIAALNAYDELYGRFPNAEKEAGELLKRYAKHVEAAQRAREILMSKMSTLAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGE*
Ga0116243_100412478	F061870	GGAGG	MKRRIQKLESLTAWKALPDASEYIQVWAIDPDQDEAEKWFETRAGARVTDPKTIERLTAYYAEALRRGTVNVTARFEDYDDPNT