Scaffold Ga0074044_10128567

Overview

Basic Information

• Taxon OID: 3300010343
• Scaffold ID: Ga0074044_10128567
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1699
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006319	Metagenome / Metatranscriptome	376	Y
F067250	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_101285672	F067250	AGGAG	MGISMNPKMSGFRKWAEIHEPTKIDKARSGAEEGGVTAAADIHQAGKTADQQPHRPWLVPGVGKL*
Ga0074044_101285673	F006319	GGAGG	VARARAADDPFSNAQEGEMAYEKLDQALRQLKADRERAEVNEAQQKKAGEEARIRFARIKSTVVGPIFDEVVARLAAEGFFAETLDEQNDASGPISLNVNLSEDDGFIRQGSLQVRFDPDEYKCEFGKSTMAKTASTNQMVFGDRPRQFNEMTKALVRETAEQFVLDLIGGDHFR*