Scaffold Ga0074044_10089046

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074044_10089046

Scaffold Ga0074044_10089046

Overview

Basic Information
Taxon OID	3300010343 Open in IMG/M
Scaffold ID	Ga0074044_10089046 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2081
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027393	Metagenome	194	N
F030957	Metagenome	183	N
F050079	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_100890461	F050079	N/A	MIGFYQDAALQDPAVAATPKRFLLPLAGGVKPGTLYLGDPYTAAVTAPAAIGAAVVSLDQTFQFPASGSAVVYVPANGSTAASQMVISYTGTSNNSLTGVTGITQTIGDEYLIRPNIVWRSRGNVVFFGSGSDVPNNLLVAFGVPTNPSTSCRSTAFGVAGGAYICAAQLIAAGAENMMRIDISVTVPPGVQQEFTNWGVSTSSFFAYQSGNTSAIPTTALGVVPMASGYVIRRDQM
Ga0074044_100890462	F030957	GAG	MNTSTQIQRVNSLTYADVAGLNVGLTRMQGEDSVAFLERCYLATTCRQDSTYEGEQDQVCLQLGLTQWAGISVSSTSLSMTITVCIGLVTVVLNGVTYTIPTVTMAPDDYWVWRKISDVVNDLNAITGVTAIMLGPDGPALQIAKQSNQFTVPSEAITMTDQMLAHANVIESSLTFSVAPGSYVFNPQTGELIFSGTLPSGLSVAYQYIAMPYNIVCSELGLFGLVEPSLATVGVSSDNVLAYQLREVVQAVMNADPSYWAQ*
Ga0074044_100890463	F027393	N/A	REPLPGQLSAPAMTSEPLYGLNVKYDISKPGSTRYAILLPVPYGSASTASNWRYLVMTPDGNFQVLLPDGTLVAYSGSAGWQSGTLSIPAPVSLALTMIGTYVLMLECMGNGQTATADEVPYPNLATPVINTYDLSNIVPAIQGIAYDVMGRLWVWTGSNAVAVKPRYDGYILDPNSLAIYLTDTYDSVSFE*

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