Scaffold Ga0074044_10013653

Overview

Basic Information

• Taxon OID: 3300010343
• Scaffold ID: Ga0074044_10013653
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6044
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F000673	Metagenome / Metatranscriptome	944	Y
F002076	Metagenome / Metatranscriptome	596	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_100136536	F000321	GGA	MGELSTSINDALLAVDLNIVELVTLQSRQKQTGRETQVVILNRLRKRIHEIAKKRNCSMNRLVNSALLAYYSKTGEGKLKKTLKARAASLRSYDTMSESERRELHQLLGGLSAMESVSLEAEEPNGTYYEYDRNLKATVKVTSDGERTPVEKLETSFEPTRPKGPRKIAHEGIAS*
Ga0074044_100136538	F002076	N/A	MKGASMQKVYRLCLEKLAGDPPRRKAAIIRSLLPGIEAALDSGQSLKDIWAALGNEGLQMTYHVFHMTVWRARKTRKPTATSSWGKQDKPSESQGLQEAKVETVEGRDPFANLRRLEEDRPGFHWRGTRSLKTLVRGTEGTNDKSKR*
Ga0074044_100136539	F000673	N/A	MCHRRFFHVSRLFDSLNARKYMAKPRIERSLLFPNKEFRERVRKASKDRGFRSEQAFILAACEREIRRGDDTESVTQFEARIAATLTNLAKHGQHLQTLVEAQVAITDVLLKYVITCVMEPPEDALPAARVRARLRYDKLIRAAAKELLNKNRDTLREMVADD*