Scaffold Ga0074044_10011108

Overview

Basic Information

• Taxon OID: 3300010343
• Scaffold ID: Ga0074044_10011108
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6824
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F001851	Metagenome / Metatranscriptome	626	Y
F013120	Metagenome / Metatranscriptome	274	Y
F069419	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_100111084	F069419	GGA	MKSWVMSKRKTKKQLAKATLAEVVKEMAKPRVVMSAKE*
Ga0074044_100111086	F001851	AGGAG	MNATSFSFGLLIVLFTILLLHRMHKLKPRIAGYGSQRMCPSCGLITSRLKPCCLECGKSLPGVSVTPILEK*
Ga0074044_100111087	F000042	AGAAGG	MKNTKFVVKLNRGGTRAPEFVQRIDRTPIQTTTNRKLALVMGKFMAEDTINSLQNSRRIGELISVQVECGRLAV*
Ga0074044_100111088	F013120	GGAGG	MEYFRFDHPPDRLILCHRSNCEGIADYLEIGEQGHEDLVCAAHTSSEMHASVLPQGVPRVERQSRVAA*