Scaffold Ga0074044_10008630

Overview

Basic Information

• Taxon OID: 3300010343
• Scaffold ID: Ga0074044_10008630
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7920
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012499	Metagenome / Metatranscriptome	280	Y
F016713	Metagenome / Metatranscriptome	245	Y
F047879	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_1000863010	F016713	GAGG	MIKFLIAVCAILTMAAGVGLAQEFTSTPRVAPQPEPPRAPVEQNSNSSWFKKFIAAPNKLQLINPAAPQQYGSGEQVVVADPQDPKQRPHAFRLFSITF*
Ga0074044_100086304	F047879	N/A	MTRAIAKMLITSLLVVSAAAQNPPDRGDRYVLRGNPKSPDKKYEWNVRTNNPIRYELINVPDGKEVVTVNAYYPDVNSSNIQYAKAYGIFWNKDGTVVALDELNRRRAGHLYFFVLRNGTVHEIRSENILPIPLYADECRVVVDPGWVSGTKIRIRQALKTRLGEFESKYFSVDFANPDDPKIQPAE*
Ga0074044_100086309	F012499	AGG	MFKRSLSIVQLAFAILTFRASAEPPIQDPIVDYLAMNVPDRVTNVGRLLVIKEVAIDMEGNGKDDIFVGTWYRNSGPNTWLWAGYAPVTGGYKRITPADSDVLIDFDGIYVGDLPDIGRPGMAQAYSLELDNKDRDQSNMISDVTFYYIEDGRLMQQGTGALDRDDPEQEAKFEYYFGPNRKISAPPKIESFTVPELVERGYHIPVWRSLKPSGL*