Scaffold Ga0074044_10000853

Overview

Basic Information

• Taxon OID: 3300010343
• Scaffold ID: Ga0074044_10000853
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28419
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004609	Metagenome / Metatranscriptome	431	Y
F012635	Metagenome / Metatranscriptome	279	Y
F026069	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_1000085315	F012635	GGA	MSGGQKMSENEHPDHLQLTSLLQQAKPLMEPMYPDQKKKWVADSPLAQEISALLAKHPEYYGEISAHVGSIFPKPKS*
Ga0074044_1000085321	F004609	GGAGG	MKRSTLFHVVATTASSVLLICAAFARQGTKMAPDAKTMTIEGAVRDLACPIQNPAGTATSFSLQCTLDCVKHGSPIIILTKAGLIYFPISKDMPDSDQREKMMPFVGKYVQATGPAFTRNGTHAIAITQIKELKSVHVDTDARE*
Ga0074044_100008538	F026069	AGG	MWIFFLGPFLSLLPTRWRKSLPFYQAVHWHSASILSGLAESVIALTALLYWYSYSVTTWVSRALDSALSRSAPTGLSVNDVGFAALVVWATHPLTWTLAFFGVEGIARLCAGFTDTVLGVFPLYLVEKTYSKIFRRGAAEPAGTVKFSQSHVSSYVDTVKGKVLTARLSQIPDELCVAKNAAEEILEIRAWCAKLDWTPPRVVRYEDRYYRLEECARGPAPRPFVYKLRRLAVGVPGRTVLIYSPDEAPVTADR*