Scaffold Ga0074044_10000296

Overview

Basic Information

• Taxon OID: 3300010343
• Scaffold ID: Ga0074044_10000296
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49786
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (87.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F000673	Metagenome / Metatranscriptome	944	Y
F008273	Metagenome / Metatranscriptome	336	Y
F016585	Metagenome / Metatranscriptome	246	Y
F105673	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_1000029615	F016585	AGGAG	MEDKAQWRVVRSGLGASSFSSVVFVAIAALLVVAALCLLPGLGTPEMALPGAGRLALAVTVMMLGFSGVLASALLNLPDTMRRMLVMLFATALLCSGFVALVGWFAVSGASGCWL*
Ga0074044_100002962	F008273	AGGAGG	MNSSNAVTRQDLVANSVEHQISSLANSSASPEELETLLTSEVDHDLIAWPRQYLETYLDSDSTGRVPLDTEQLQDVLEAAFDRDASLAREYLEELNCERQPKILGNSTLQIATVRSGGKETEYELLFDPTDNQDLIHLIDKIDVHFWERQNAQTTPSLETQRDTLRRETTTSVATHQPGSGAVELRDKTTGTDARKLLGAGELPRGLQSALKQLAPDARVEHAQTGSGIYRGRIIGETEKSLIQQITSHCEVVHRKDLLDTVPVIGENVRIVYSNDIARVLPIKERSNTQELGR*
Ga0074044_1000029624	F000321	GGA	MGELSTSINDALLAVDLNTVELVNLQSRQKQTGRETQVVILRRLRKRIHQVAQNRECSMNQLVNSALLAYYAKTEEGKLKKPTKGRGAAMRSYDTMSELERRELHQMLSGLSAVQPVSAEVEEPDGTYYEYDRNLKATVKVTPDGERTPVAGLETQFERAPQKGQQKAAHEGMSS*
Ga0074044_100002966	F000673	AGGAGG	VDKKGFSRNFRYPSSELRDQVRAAVKERGFRSEQAFLIAACEHEIRQGANTDATTQFEARVAATLTNLAKQVQGLQTLAHAQVALTDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEGISNKNRDTLKGMVTDE*
Ga0074044_100002967	F105673	AGGAG	MQCRRMIYERHGYWNIKGWGHFVVHSCLNRLHFLRFAWHHFEQKAVPLRYQS*