Scaffold Ga0074044_10000053

Overview

Basic Information

• Taxon OID: 3300010343
• Scaffold ID: Ga0074044_10000053
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112197
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (65.42%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000696	Metagenome / Metatranscriptome	931	Y
F001619	Metagenome / Metatranscriptome	662	Y
F085961	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_10000053102	F000696	GGA	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTETDSSLQVSITDATAPPNQLPTDLLIPVKIWERPNCSTDDFLEMVDLTQHGGLPSRVQDTTLSVWEWRADGIYFIGATQDTEIRLRYSKAYPDFTDSTSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF
Ga0074044_1000005374	F000536	N/A	MIELSPQQMQILERLFAAGFRPIAIPPYESALCVRRGECAAVLSPIPSGGLKMLASPSYLVDGNLSVQLKRGAGEVFVWKKSELPATSERLEELVSFRRELAGLLELPPTQ*
Ga0074044_1000005377	F085961	GGAGG	MTTRSTQPPWEFLLSASRNSLQSFELSRLAHAADLRKEIAALLDQWMEENAAAMLARLLLQQREHPGRPPDLLSAAESRKNGAHTVSDNFLADRAASLPANRGPS*
Ga0074044_1000005380	F000188	GGAGG	MGVKPELAFDVCWEVYRGAREVLESKRGISALNWKDTGKFLWRPDIRPRLNEWVADFALAGQKALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSERSWVNWTEEVRHRVGKELLRRGMFPPRKYFTSGE*
Ga0074044_1000005391	F001619	GGA	MFELLEIWLRSKYVCALEADVARLRAENRALMNSLLGTAGFPPVEFPEAPKPQALPRVRKRSWHQIQARRETGAARDSADNSEFVDANKANGPLPHS*
Ga0074044_1000005399	F000512	AGGA	VRFNSRQSRTTILRETHETPEAVAQLLRRAGGVNLFGEPNYRAVWGWNRLAWIGGKFEEHDPATGSLIREVVELRQEPKYPAVNRWHIERWVPPEAYGSPRVWYSQTIEREKGISIPALGPYPSRGEYEHCFTLEGPTGEFVQLTPTVAEHIARAIEFSRRVPRSRKRRSIDDRERRDDRAYDAWAFDKLDDAVPAFHKQPFVTVR*