NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074044_10000050

Scaffold Ga0074044_10000050


Overview

Basic Information
Taxon OID3300010343 Open in IMG/M
Scaffold IDGa0074044_10000050 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116453
Total Scaffold Genes101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (63.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000743Metagenome / Metatranscriptome910Y
F000833Metagenome / Metatranscriptome871Y
F001021Metagenome / Metatranscriptome804Y
F026947Metagenome / Metatranscriptome196Y
F033524Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0074044_10000050100F000743AGCAGMTKAETKRLSTVIRTTEYLFLENIALKLVLEHREVPNWQKLLERLLADKEMLAGVRLKFRDLYDQLEESTDPSAALEALLEELPAPKKAQ*
Ga0074044_100000502F026947GGAMMTSTSNRHTSNSDDTIVETGYSHGMTASAALYYPSLAGNCWDDELLPSGD*
Ga0074044_1000005043F000833N/ALLVILFPAQVLLAGDTASAMLYTNGAAWLNGSEVPKSAAVFAGDLLQTRPDSTASIQANGSNVMVLADSLVKFEGPAVELEHGAVRVTTSRGLAARAGEVTVKPASDSWTEFQVTDVDGRVQIAANKGDVTVQDDKGTTTVTQGQQTTRDDTSDTDRKKKKRRRGQGAEAAAKGGILSSTPAVIGGLAVVGGATVWVWTRSGSPVSPDCPTNPCQ*
Ga0074044_1000005094F033524GGAGGVAEEQVIKLLEEIRDLQKAHVENYKDALKNQREALDFQKQAVRRQRITSLVIGFVLLAFLIFLAWSSHSG*
Ga0074044_1000005096F001021GAGGMTKAIAIAVLSVCLSFVAGMAVAERVHDWPDLVAAHNHTQEAIREMDHARAANHYDMAGHGAKAEEHLRAAEHELHEAIEAARAH*
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