Scaffold Ga0074044_10000001

Overview

Basic Information

• Taxon OID: 3300010343
• Scaffold ID: Ga0074044_10000001
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 294498
• Total Scaffold Genes: 258
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 153 (59.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010842	Metagenome / Metatranscriptome	298	Y
F017172	Metagenome / Metatranscriptome	242	Y
F039020	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074044_10000001204	F039020	AGAAGG	MTMTGISGMAAARAADAMLRTLGGTEVILLFPAAGLPGDAVADLGLVDPGVVQALISPVIVRELTTETNGPRRRIEMLAGHAAMAEQVSQRNVATAEVLFETALGLIYRGDLFHIQGFVVERLAGVAYLYRVSAMA*
Ga0074044_10000001255	F017172	AGGAG	MSKFGKYFLLVTGFALLATFARIPGAVINVHAKDCACSVASLKGTYAWRRSGVNKSMGGPVAEMGLDVFNGDGKRGITRSTGISYPESYDWTNVPWPNGSYTVDPDCTGSLFNASGTKVENVIVLDGGKRFSVISFEPDKVVTGEGTRLEEEKD*
Ga0074044_1000000186	F010842	AGGAGG	VTPLTHSSWSRFFEEFHCRGCGGEEAYRSRPRGFFERHVLRVLMLQAVRCERCYHRSYVLRTITVLKRVPSQRKKTPQSQPPDSAMPGNRVA*