Scaffold Ga0116252_10243533

Overview

Basic Information

• Taxon OID: 3300010342
• Scaffold ID: Ga0116252_10243533
• Source Dataset Name: AD_JPNAca1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1092
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 37.43
  • Long. (^o): 138.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037746	Metagenome / Metatranscriptome	167	N
F074119	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116252_102435331	F074119	N/A	SEIQVFEVLAKILPYLVSLGIGAFAGWELVKTKIHELAEFFNVVDEALYDDAVTEKEFRAIWEKGRALFQWSFAAKKGKA*
Ga0116252_102435333	F037746	GGAGG	MPVDIEWAKASDTVGQEFESNYIPGTTDKDLEDARALMEKLLKKYGSRNALEADERDWAKYKRAMYVVASRSKDTMDRANKAREELIKRKNLLSQFFDDNREILFKLPEWARINLRKYTDYGLLVDQEYLWQALGELGEDGLAEHLLNIANYIYLDTGFLGGTREDYDALQKGPVRSIYHRPTCKAQKTVHPDCGSGCNKV*