NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116252_10088232

Scaffold Ga0116252_10088232


Overview

Basic Information
Taxon OID3300010342 Open in IMG/M
Scaffold IDGa0116252_10088232 Open in IMG/M
Source Dataset NameAD_JPNAca1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2188
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)37.43Long. (o)138.83Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025488Metagenome / Metatranscriptome201N
F051872Metagenome / Metatranscriptome143N
F054846Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0116252_100882321F051872N/ARGQELKQLRRDMDRRLKNVEQPIANIAQNEHKQRLDNVSLSLKQAAIDQDFDAIDALLAERDKLMKAEPVAKQEEPLAIDDTNDDGETQEQLQAAAQKWIADNPWYNKLTQAGRDQAAKLEAEYRAKVDCTTEEALAYVAQEMGKDPIVAVLKGKLKSPDVTPRTAERPRVASASESSLDPASRNIYNKMISQGLLKTAAEKSAFIKDALEA*
Ga0116252_100882322F054846AGAAGMSNELNLNDLGLGDNSQSAINEKMPRRGVEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKADKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*
Ga0116252_100882323F025488GAGGMAYVSRGFIPQTSLASNLGFTRPMYIPAGNATATALYDIVKVSTSGSTVDTAGVPAGLMGCVRVDGKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSVDTVTGTSGMQISSATLAGSPGMFRLQQRSFAVDNAAIAGTNTKWLVTFNTHQFKATA*
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