NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074045_10171240

Scaffold Ga0074045_10171240


Overview

Basic Information
Taxon OID3300010341 Open in IMG/M
Scaffold IDGa0074045_10171240 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1466
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F002396Metagenome / Metatranscriptome564Y
F003157Metagenome / Metatranscriptome504Y
F004392Metagenome / Metatranscriptome440N

Sequences

Protein IDFamilyRBSSequence
Ga0074045_101712401F001528AGGAGMSEKNQIVVVLIVALFLGALVDRSTALKIVAGVVLLWILQNQPAVFECIRKLFSFVQRRPSVREYRGGVTTFRAS*
Ga0074045_101712402F004392AGGAMPVNGPETIADSKPSQSVPSEGRSVRAARNAKPAVGRGASTRRRRDRQDSSETNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS*
Ga0074045_101712403F002396GAGGMRSLVPSTYDRADVLMSAGCSTFVSAALILVIPRVGIILLEILLGLFFIGCALAARARLRIRARSQQVKEGPEGSTNAKAKWFDRYDVLMILTVVAVYSSVSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRKDETHDGRLHMDAGEKQEIARKETVERCQ*
Ga0074045_101712404F003157N/AGFARFGGLDRLDWLMIVVSVLLGTVAKQHHVLDLPDWFLEWVSPFLLMVFGYKARRKITEVVQSLRDRGKGSPEE*
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