Scaffold Ga0074045_10164023

Overview

Basic Information

• Taxon OID: 3300010341
• Scaffold ID: Ga0074045_10164023
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1503
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074045_101640233	F020887	AGGAG	MRKKITFYAEIAGNIWMPAVECTKEFHLELNRIPRNSTTRTYPGIAPRSMEITCLRDALLHLTNDGDFQSCSITWATLEVSHYFGDETRGTRTVKIRTRVWELRGVGQDADCFAEVRS*
Ga0074045_101640234	F013913	N/A	MRGSFLAGIGLWVLIWAMLFKGDEIAKAGGFERWVSPDRCLRWIRNHKSTSLIGTELINYSHTGLDPLGVTFALGGTLTNLLVIYILIPMLDKAKRGGKALSLQF*
Ga0074045_101640235	F025336	N/A	AEAMLYSASRSKLGQTRRQQVLMGNSQDSVRTLPLVDEYLKRKTAGASKAQTFVVSKVAEVCRRAAHTRSFEYLVLHLIRTAIKRRSKYLNIQRRVTICK*