Scaffold Ga0074045_10010621

Overview

Basic Information

• Taxon OID: 3300010341
• Scaffold ID: Ga0074045_10010621
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7628
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074045_100106215	F014888	AGGAG	MNKVLEALLTLVVLAGLYCAIPTSGPPARNSAVRADQAVIIADGSDPMPLCRHAVCPP*
Ga0074045_100106217	F003832	N/A	MKSTAQQLRTEANWPPQEGQIISFRSSTGSETDILQEVRWGLVWRDFILEDGRVIPEHRVSGCPRPQVWRKISEVTDQEREECEERLLSMAGAGLDPRKRDQPFWAELNQYLAYTYLRFKQAGPKAQDSEPG*
Ga0074045_100106218	F005268	GAGG	VSRSGQETEEQEVWRVLSEAGLIEIRLDQFAERIRDVKRIVGIRLHELLDFKTGIQERESAAYSLGTLKRLELKVLANVPKPPDSSEM*
Ga0074045_100106219	F025325	GAGG	MTSVGPKQAKKTWEELVAAAAGETDPEKLGTIMEEIFAALEERERSLGLSQNPAGS*