NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0074045_10006316

Scaffold Ga0074045_10006316


Overview

Basic Information
Taxon OID3300010341 Open in IMG/M
Scaffold IDGa0074045_10006316 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10198
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028953Metagenome / Metatranscriptome190Y
F065335Metagenome / Metatranscriptome127Y
F102308Metagenome / Metatranscriptome101N
F105715Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0074045_1000631610F065335AGGAGGMATIITPANVTIDPAADGALVAAAFTSHECAYCLSPIVSEQRWVREKIYEPSTVNGPRYRRYHADLFAAEELSCWEKRAMELEIARTARTAVRVM*
Ga0074045_1000631611F028953GGAGMSVTFMFVRKWVRVLRYGKAFSFVDSMRCGLWLARG*
Ga0074045_100063162F105715N/AMVAEGTRMLRAEFNQRNNGLVLKLEGRLVSAWAIQVKSLVSRRFVRNGLLVDMSEVTYVDSVGEQLLLWLRDLHAKFLAEACYPRDICERLHLTLKGDADRPVPSATEVLPSSTVAHLPRPGDLP*
Ga0074045_100063163F102308AGGAGMSCIRSLKKRKAEAKRVSPLENLARFEDEHETLSRLAFVITGDIGTAERSVSEARELVTNGVYPFPFREQLTEWVKWVTIKAAITNSLHEIARCESRYLNQNCMHSEHLLNGNDSKLREFRNFLLPIDPEIVIGELDPLARAVAILRTTARASILDCILRLKLSLDTVLAANCRAMTWFEEKRTGLSDKAPTPEPKLEKP*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.