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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010341 Open in IMG/M |
| Scaffold ID | Ga0074045_10006316 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10198 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (52.94%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028953 | Metagenome / Metatranscriptome | 190 | Y |
| F065335 | Metagenome / Metatranscriptome | 127 | Y |
| F102308 | Metagenome / Metatranscriptome | 101 | N |
| F105715 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074045_1000631610 | F065335 | AGGAGG | MATIITPANVTIDPAADGALVAAAFTSHECAYCLSPIVSEQRWVREKIYEPSTVNGPRYRRYHADLFAAEELSCWEKRAMELEIARTARTAVRVM* |
| Ga0074045_1000631611 | F028953 | GGAG | MSVTFMFVRKWVRVLRYGKAFSFVDSMRCGLWLARG* |
| Ga0074045_100063162 | F105715 | N/A | MVAEGTRMLRAEFNQRNNGLVLKLEGRLVSAWAIQVKSLVSRRFVRNGLLVDMSEVTYVDSVGEQLLLWLRDLHAKFLAEACYPRDICERLHLTLKGDADRPVPSATEVLPSSTVAHLPRPGDLP* |
| Ga0074045_100063163 | F102308 | AGGAG | MSCIRSLKKRKAEAKRVSPLENLARFEDEHETLSRLAFVITGDIGTAERSVSEARELVTNGVYPFPFREQLTEWVKWVTIKAAITNSLHEIARCESRYLNQNCMHSEHLLNGNDSKLREFRNFLLPIDPEIVIGELDPLARAVAILRTTARASILDCILRLKLSLDTVLAANCRAMTWFEEKRTGLSDKAPTPEPKLEKP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |