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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010341 Open in IMG/M |
| Scaffold ID | Ga0074045_10002629 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16565 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007593 | Metagenome / Metatranscriptome | 348 | Y |
| F012141 | Metagenome / Metatranscriptome | 283 | Y |
| F047844 | Metagenome / Metatranscriptome | 149 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074045_100026291 | F007593 | AGG | MATHTGHWLTLKRLRAHGAIVALCLWSLYLWTVATPGLRDRNGNLKGTDFLHFYTLGSLASAHRGADLYDINAEAALAAQRVPEAAGIRYLPLYPPQVSICFAPLAHLSYGWALILWWGCSVV |
| Ga0074045_1000262911 | F012141 | GGAG | MSGERYWVWLVVRLAVAVAIVGWAASYLFTGSGEKEFQKTLEAMKQVHSFRASVTASAGTRHKEMLWEVDCPRDLYHYQWHETDTDIPAMDMTRDEVHFATEEYHRESDGSWSKPRFAREHPPAWFCGALAQGNDNTLMPRIATMIQRGILQKGDKKTVNGVRCREWLVTMKGAPSGLEHDTVCLGLEDHLPYELTVDWLQLRSSFSDYNAPITFDVPDAVVQPTITLTGSN* |
| Ga0074045_100026299 | F047844 | AGG | MPAIAVLLVCVGAFAWGQDSETPSNPLGDLARQTRAQHASAADAKSSKAQELVDDMQQEQEAAANAPTGFTNYNAGDYRLLVPFPFSLEGRDNGGAVLLGSRLGITNTEVVAGNPIPIPADLSDVDLMNVVRQLAGLHGAQAYCSPIKQGSHRAFRCAWQGNPYLLGHVVWGSIEFIVGSNSLVPVMCVSPDDMHSCTIYDNYGHNTCSDRDRQTYGTDQRKVQAAANARIHDEQTTFQMCDQIIYPSIQLKEDIVVHPASISEKPASKTPAAALPATSGTTPAQEAASGESGSQGPSLAELARQTRQAPHDKAQAKLDSAEGTTLAPTGFQPFVLQYCQNPQQCSEASVVIPEKAEVVSRTNGQYIFKAALDGESVMLYAGPADVNAPYRSLTDPDYIRMRDLANANGWSREKPDSVSTQDLTIEGRPALMTRFRYQRDQKRWWIGERVLIENLGKQFLLGCAAPEEHFADAEVVCTTLVNSLRLP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |