Scaffold Ga0074045_10002046

Overview

Basic Information

• Taxon OID: 3300010341
• Scaffold ID: Ga0074045_10002046
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18972
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044602	Metagenome / Metatranscriptome	154	Y
F102344	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074045_1000204615	F044602	GAGG	MSPNGGVSREVTRNAGINDSNLLELGEQMRKFVLTASLPLFLVLSLLAGKKIGDYPLQIQVIETHWHRHINRIIGIEHVDGWGRGNVREGDSIRGFDFVYSSAQPLQRTDPKAHYLAKWKKESLRMEVLVGKIGASDKYQTYDLETTVIEDVYVPGAGGAIAISQEQYKDKWAK*
Ga0074045_100020467	F102344	AGAAGG	MKTMKTVVLAAMLTISAVSQAKPKHLPISNYMRELGLTYLEETQDLADRCEDPTSKCSAVIDNWKKKMEAIEKRADLALDEAHRPAGDTAFFNLLVRTRTEEEIYFTGTVIVGKEDLDIHLAGYLNCQRHAKEDMNKGITNAILLSDKTVLETDDKCEAGVKRPK*