Scaffold Ga0074045_10000087

Overview

Basic Information

• Taxon OID: 3300010341
• Scaffold ID: Ga0074045_10000087
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77945
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (73.42%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F002897	Metagenome / Metatranscriptome	522	Y
F005822	Metagenome / Metatranscriptome	389	Y
F011771	Metagenome / Metatranscriptome	287	Y
F035109	Metagenome / Metatranscriptome	173	N
F091190	Metagenome	107	N
F098450	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074045_1000008713	F091190	AGGGGG	MSIFNQEMLPDLASTADGITSEPEGACGENEPDSQLQEILFSEVLTSVCYWSMVLLLAIVGAGLVYWRLTHPGPSAEPVGDPFGVTTPAWMIVSLPPLGVVAALGQAAWCAARGQRVWRMLATAAGLIAVMGATTLLETHLVAL*
Ga0074045_1000008717	F001528	AGGAG	MSERNQVGVILIVALLLGAFVDRSTALKIVAGVALLWTLQNQPTVSECIRKLFSLRRGGLSVREYRGGTTTVHAS*
Ga0074045_1000008718	F005822	GGAG	MKSSEQTIASTGPESTADSKSTQPPAVEGKRARAVRDSQATPPRSAVSRRRRIRHDNSEAAGEERFFLASGSGNGDVPALGRECGSEAEAIIDAFRERVNFYTVSEFQTRADVGPSGEPILRKDGLKKTNPAS*
Ga0074045_1000008720	F011771	AGGAGG	MDPKARQNGENSSASGPARLGGLDQLDWLMIVMAVLLGTVAKRYHFLALPDHFLEWILPFLLMVAGYRARRKVTELIESRRAKAKRPTSK*
Ga0074045_1000008731	F098450	GAG	MSPWPVLFAAAFAMRLVLRGPAAKGPSWVQKACRATIAFLVYSGTLYLLKWNPFWKLMPSMDFGQRNKAEGFLLMISTLVWFIATLRILFRGLRLPGVHVGSGGLENRPPQKGNGRRSLSLTDLILFYLFMRK*
Ga0074045_1000008743	F002897	GGAG	MAQRAIRFSETTDKGIQEATRKRGFSSPTAFIRHTVEQELSVRGEELVGAEERLAASIEQVRRDIFRLGRAQQALFAFLDSLAKVVLTCVPEPGGEAMEAAVARARNRHARLLKNAGQAMVGDSKLAIQDLVAHGEE*
Ga0074045_100000877	F035109	AGGAGG	MQTHQSAAFTANPILTLEDLGLEPTVSLDEASRGLAERSEAQIVRWIQFPAGALFFVLAQGDPSSGAVYIFDRRSGVFYFVVFNDQNWGGYSVAEYESLERTHRISRLAQRPWLLNRRCESGETH*