Scaffold Ga0074045_10000015

Overview

Basic Information

• Taxon OID: 3300010341
• Scaffold ID: Ga0074045_10000015
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 136120
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (73.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000442	Metagenome / Metatranscriptome	1132	Y
F004161	Metagenome / Metatranscriptome	450	Y
F014363	Metagenome / Metatranscriptome	263	Y
F093119	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074045_10000015104	F004161	AGGTGG	MTQTRCDVLSCVEHERLEFELLEVRTRGRYLTRLRSISREEQAEWDRREQRALASLVDHELEHGCNR*
Ga0074045_10000015107	F014363	AGGGGG	MIELEVHPEIHIRELHERTAFSTCHECHRSFRAKCEDQLSLELCDSCFDALRQHREPVISVHVKPRPCRVLSV*
Ga0074045_10000015114	F093119	N/A	MQTAMTTERKRSAGVTAAATLAVLGSMIAFLIWGASILPLINLTANAAGQHLYEVHPLAFALVALVPPLLVALGLFTGVGLFQLRSWARKAALLWASLALAFCLSMIALRPFETFAIPEHFVTEVESMRQLLAISVVVMLLPVSIWWLFFFRLKSVVAQFEGPREPSSLSES*
Ga0074045_100000158	F000442	N/A	MGEILLPWGLAMLFASVSRGKNLGTRLLPHRFKDNRYHVQLGKEGPYIPVSDDREIPSYLANGYSLVMSNKDESRGPSLVRPESIQGWSTNFKDLFFPAL*