NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116250_10231542

Scaffold Ga0116250_10231542


Overview

Basic Information
Taxon OID3300010340 Open in IMG/M
Scaffold IDGa0116250_10231542 Open in IMG/M
Source Dataset NameAD_USOAca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1119
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)37.8Long. (o)-122.27Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004234Metagenome / Metatranscriptome447Y
F015420Metagenome / Metatranscriptome255Y
F071222Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0116250_102315421F071222N/AMDKEQIMTIILAEEASLYDQAKESAEAFGRKDEATIRAYAQWYAITNLIDRINEKNN*
Ga0116250_102315422F015420N/AMKKIINYFTPVGAEEKAFAIAMLIVTTVILSILFLFTFLELIL*
Ga0116250_102315423F004234N/AMNFIDLYKRDNTYFSNWKTDYDSDVYIAGTIEPFTYNATETDDEYMSLFILSDANLNLLKSKI*

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