Basic Information | |
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Taxon OID | 3300010339 Open in IMG/M |
Scaffold ID | Ga0074046_10015737 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5437 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004823 | Metagenome / Metatranscriptome | 422 | Y |
F006278 | Metagenome / Metatranscriptome | 377 | Y |
F010114 | Metagenome / Metatranscriptome | 308 | Y |
F029198 | Metagenome | 189 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074046_100157372 | F004823 | AGGAG | MYATKAVNGVPAIQRDGQSVLSVCDENWDFANWLCALLNELGHMPELLLTEHDREWLQAMDVAFRRTLQHA* |
Ga0074046_100157374 | F029198 | GAGG | MDSKPNSRAVRVGGEVLVLHCWACGTAHCVNQESCVPGELSHMVCSNSNCRMSMFLVNELALDDKTRKQMTKSELNARVSYSRFWE* |
Ga0074046_100157376 | F006278 | GAGG | MFRAEIQWLASGPTLKLEGRLVADWAEQARRLVTNDVVPKGLIIDLAEVSYVDSVGEQLLTWFGSVGAEFVAGNVYAVSVCERLRLSTLERAAPPHKRRYGSTEEKYSMAHSHTG* |
Ga0074046_100157378 | F010114 | GAGG | MIIELNDDETRLLYNVLLEQAAEHLSYANPSELAERLYKLATRFERPVRTTSITTA* |
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