Scaffold Ga0074046_10015737

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10015737
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5437
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y
F029198	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_100157372	F004823	AGGAG	MYATKAVNGVPAIQRDGQSVLSVCDENWDFANWLCALLNELGHMPELLLTEHDREWLQAMDVAFRRTLQHA*
Ga0074046_100157374	F029198	GAGG	MDSKPNSRAVRVGGEVLVLHCWACGTAHCVNQESCVPGELSHMVCSNSNCRMSMFLVNELALDDKTRKQMTKSELNARVSYSRFWE*
Ga0074046_100157376	F006278	GAGG	MFRAEIQWLASGPTLKLEGRLVADWAEQARRLVTNDVVPKGLIIDLAEVSYVDSVGEQLLTWFGSVGAEFVAGNVYAVSVCERLRLSTLERAAPPHKRRYGSTEEKYSMAHSHTG*
Ga0074046_100157378	F010114	GAGG	MIIELNDDETRLLYNVLLEQAAEHLSYANPSELAERLYKLATRFERPVRTTSITTA*