Scaffold Ga0074046_10008461

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074046_10008461

Scaffold Ga0074046_10008461

Overview

Basic Information
Taxon OID	3300010339 Open in IMG/M
Scaffold ID	Ga0074046_10008461 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7865
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032056	Metagenome / Metatranscriptome	181	Y
F060299	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_100084613	F060299	GGA	MAPKVTNLFVSSALLLGLSVTSFARIGETMDEAVKRYGEVVHHGITYGEELYSFKKNGFNILAHFHEGKIDRIMYSSESGRKLTDEEIDTFLKANNYGRPMNEDLPYIWVGKDAAATYSKWPRDTWHLDIKARTFGRKRIVAKKPTEKAKLEGF*
Ga0074046_100084616	F032056	GGA	MSDLVYFEYALVLPEEHYLIEVQTRKPGGEVRGQAEIEGIAKECLAFVIGKGHDDQVKDLRPNPISESGAQMLKKVQSLLTRPDSAVYLVE*

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