Scaffold Ga0074046_10000856

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000856
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28051
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_100008563	F025325	GAGG	MTSDAPKQVKKPWEELIAAASMETDPEKLGPMMEEIFAALEERERLLSRSQNPTGS*
Ga0074046_100008564	F005268	N/A	MFEAMNRPDKETAEQETWRVLSEAGLVEIRLDEFAERIRDVKRIVGARLHELLDFNTAIKERESAAYSLGTLKRLELKVLANTPKAPDPSEI*
Ga0074046_100008565	F003832	N/A	MKSTAEQLRTEANWPPAEGRLIAFKSSTGSETAVLKEARWGLVWRDFILEDGRVIPEHRISGSPQPQAWRKIDEVTDHEREECEERLLSMAGSGMDPRQRDQTFWAELNQYLAYTYLRFKHAERNSDTEQ*
Ga0074046_100008567	F014888	AGGAG	MNKVLETLLTVVALAGLYSAISTSAPPPGHSAIRADQTVLMADGTDPMPLCRKIVCTP*