NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074046_10000493

Scaffold Ga0074046_10000493


Overview

Basic Information
Taxon OID3300010339 Open in IMG/M
Scaffold IDGa0074046_10000493 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36196
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (69.81%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000272Metagenome / Metatranscriptome1408Y
F003322Metagenome / Metatranscriptome494Y
F004586Metagenome / Metatranscriptome432Y
F004589Metagenome / Metatranscriptome432Y
F010024Metagenome / Metatranscriptome309Y
F069206Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0074046_1000049322F004589GAGGMKRQYLHLSAYACDQCAGPVVAGVIAVRENEISKETDVREVGAICLSCGYRQSKATEPGLPHSFAPRQWESVNVLTARRGPRELH*
Ga0074046_100004933F004586AGGAGMMTTMEQTKCAHVPCRCVAQPGDKYCGPACKEAGSEEIEIACQCDHGICPLTV*
Ga0074046_1000049337F010024GGAGGMRDKSESSFVVVRFNERTYQSGGVVAVIKGTTAAERTLNDFDWRLSEENRRAGWRYFLEKTDLRSGTDPEQATKLRQARLDLQES*
Ga0074046_1000049338F003322GGAGMDCQELDHLEGDFIQARAESRDLDSLGWTDREFSSLLAILDHKREGHQGERCPGD*
Ga0074046_100004934F000272GGAGGMSQTVVERTAEHIGESARRASRATSAIADAIEDSVGVVRHAAKQGGDAAEEILNDTTQRLQRHPLLTVATTFAVGVTVGTLIGWMLKRR*
Ga0074046_1000049341F069206N/AMEFFQLHHPPDVTVLCDRKACEQVADYLEVDDHGHEYRLCAMHTDSKTHASRLPTRRPSPDLPFRSRPAA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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