 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010339 Open in IMG/M |
| Scaffold ID | Ga0074046_10000491 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36325 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (73.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000188 | Metagenome / Metatranscriptome | 1692 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F007488 | Metagenome / Metatranscriptome | 350 | Y |
| F076450 | Metagenome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074046_1000049115 | F076450 | N/A | MRGDSQGRSVQIGRYLNSPVALNVGVTSASVQLNPSRHYRLWGSVDLFFQFGPTGVTATLSSHPAAAKLDYLHYTDDANTTLAAIVSSGTGVLFISEIDAQGV* |
| Ga0074046_1000049133 | F000696 | GGA | VRSLLNDSQGNLFTDTLLLPYLNAAYRKLQRAIGNAGGGGFIQDDVLLVVAAVAGQDASLQVSISDASAPPNQLPTDLLVPLKLWERPNLSRQEFDEMVDLTRHGGLPSRVQDVTLSVWEWRADGLWFLGATQDTQIRLRYLKAYPDFTDSTSPVLVRNAQEALAYATAALAGWSRGSPLAEKWDDAASDAIEDLVVAAVRREQQSGRRRRPFSARSGYTPF* |
| Ga0074046_1000049139 | F007488 | N/A | MTKVFLPCRDAAEQCSTSTGIALRIREYDEGDLQELQAIHAAQGFPYEFPDLQNPLFLTRLVLAGDESDPAEGKGIAGAALLRLTAEAYLLLDPKRGTPKERWQWLLGLHEATRRQAWERGLEDVHAWLPPEIASKFGRRLARLGWIRDDEWMPYCKRLK* |
| Ga0074046_100004919 | F000188 | N/A | MLFRSRSSEVLAKDTGRRDEFAEVEEEEQRRAEEKMSVKPEMAFDVCWEVYRGAREVLEAKRGITALTWEVDAKYSWRPDLRPKLKDWVADFALAGQAALEGPERASRMVLFRLYYLGLTPYERARHFLGLSERSWVNWSEEIRRRCGEELLRRDLFPPRKYFGGGD* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |