Scaffold Ga0074046_10000342

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000342
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41625
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (54.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000780	Metagenome / Metatranscriptome	895	Y
F008261	Metagenome / Metatranscriptome	336	Y
F053983	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_1000034221	F000780	GAG	MDTQIENEKPEVETKTGAKRAYSSGHLMCRTPLWGVAGFLGCAYFAWMSFSHVTRNEYDWPHDLWTAATYVVWIVLLAALAFDTRCLRERMFFGLLVINFVIGCGLTLWSNVPPTDVRMARIGTGVLWALAALVSLTTLRGAPMGDGAAK*
Ga0074046_1000034228	F008261	GGAG	MKIWHLAYAALGIAVARWVFKRQSMQVADPISRLRTSGLL*
Ga0074046_100003425	F053983	AGGAGG	MTRKLAWLALFVSLSSVLLYGAPQMADEKASATQTVTGCLQKGAEPGGFFLISTDNKHWELYTSPEVSLADHVGHTITVTGTVAHRSKAQEEKSQPYEQKEMGGRQHGDLQVSSVKMVSATCSK*