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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010339 Open in IMG/M |
| Scaffold ID | Ga0074046_10000248 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47886 |
| Total Scaffold Genes | 70 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (58.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008012 | Metagenome / Metatranscriptome | 340 | Y |
| F038947 | Metagenome / Metatranscriptome | 164 | Y |
| F053020 | Metagenome / Metatranscriptome | 141 | Y |
| F075569 | Metagenome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074046_1000024831 | F038947 | AGAAG | MGLLKAPSYVLPLFLLALMALTPVHAAQPSIPINGRYSVLTIKIYIPTTPKWAHDVVLNAAIAWNKAQLWNLQNNPTATLYNFVETDDGTATSIVSFSMPAAVASIAVGWTTYKYAPGSRTSIVSTQTYLTPTVFNDAQGSNATARSYAFWLALHELGRILGLGSILDGKDIMEPRYTPERITQVPNLSTLDLYALHVLAQGSAPTFVTLPDGVQDQFTPVTVFLPST* |
| Ga0074046_1000024844 | F008012 | GGA | MVFAGIFLLLAGLTGIVYGVGVNLQGMLARGASDYSFISAYITEWTLVLLAGLTLSVAGSRRK* |
| Ga0074046_1000024856 | F053020 | N/A | VGFGGSFIFGAISAVSVLLITVGVFYVLIKLGSLLDALKEKTEAGSSKK* |
| Ga0074046_1000024866 | F075569 | AGGA | MVEQTEIKGKLRDHRAVIDSAAPLILGFVAYSVAAVSTFSIPQLTHVHLDQVAIAFLTSMAGLLVIGLGYGSIVLLGGICSLNIAGLFSKLTKTRQLIDPKEEKSLELRKVLIEKSHLVYLPLVLFFSSIAIGWDIYSIIPPRTTTTRPGTLGLVLRSLNFFATPQRANAVLFSLRLTPGLIAITLISGLVPSIALPYFRRFKIVGINSGPFHSTVLTAVFGSVVGLSILVSLLGIFYKVLWAGAPTSYHYALIVLIGFSLHYSAGTYIGRGKAESIILGRLAKGRYDRNRIVVLDRTLNPNAEAIDLRSLLRPQLDGG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |