Scaffold Ga0074046_10000116

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0074046_10000116

Scaffold Ga0074046_10000116

Overview

Basic Information
Taxon OID	3300010339 Open in IMG/M
Scaffold ID	Ga0074046_10000116 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	66760
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (64.06%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026812	Metagenome / Metatranscriptome	196	Y
F050161	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_1000011648	F026812	GGCGG	VTAAALWAIAISGAVAQEKSASCADLRAAKAKTYGFHLTQLDEAQIDAKSKEIDAYWKQLQAAGPEGISCLKEMLAAEKTDHIFQFDGASFLFQIDKSPDSLNLVKDALAQADFQETDPANYLSLALDLGQLGVDIQPLASKLLLYPNAVIHISEHSLDLDSDTAALFLYGSMNPAKASKALVAQLQAQEPFVRAGAAHLLAEQMTEEAFRTLSTWGGLADIKEDYRRNDIQAVMKYQAPDLAEIANPKWTREQVLKIIAGLPHTRKEFDDVMSTKGAEFDKQTREKKPTQDELTKIVADSEPIYGIADRTAFQSSAVATLTADDFGILREARRKALYNISDESLSEYLAYIQVMIRLLNRLDLYKDYRAH*
Ga0074046_1000011649	F050161	N/A	MATLTSAASCAFADGNGALQETAQRLAERVAAVPGLHGPLRLEWHPDAQWSEGESDHWLDILRNEMQKRSVNLTEDAAAPALALYAEETPTQVVLTAKTRVAEREEVRLVAEARALLPPGTLPVAPVRLERQMIYESPDRILDASSLWNGPEGGLALLFYRNFDVVALRLDSKGALKQSVSLSAANLKPSRDPRGEMTPRGNVVSVHLWGKGCEFSWESPVDVKCHSEKPLVPAMQVWRGVTLLTSPCDGSSWKLQFSGSGPNSKEVLQVVPGEAVRESSAAVLSEFPGPILGTNGEQNPSSALVVARNLHTGNYEVYKITLACGN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.