Scaffold Ga0074046_10000094

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000094
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73871
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F000175	Metagenome / Metatranscriptome	1756	Y
F000532	Metagenome / Metatranscriptome	1046	Y
F001364	Metagenome / Metatranscriptome	713	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_1000009436	F000175	AGGA	MDEGRKRVIGIMAAILAARKLSPYDGGKRVPATVAAISDAVRWAEAIMCEIDRRWPDTGKSER*
Ga0074046_100000944	F000532	AGG	VTLIKKRLGIEPVLTPGNTGQFEVIADGKKIAERGGNWFSRKFGAGYPDLNGVVEELEKQRR*
Ga0074046_1000009452	F000092	GAG	VKQHLGRQSGVQTVEVSLIDGKVDVTPKEDGQIDPAQLLKATYDSGVTAAEMDMTARGKIVKDSSGNFAIQVAPNRSFVLAPNELSKGLEPLVDSTTLVTVRGQLYKKPAGKKKTDASAPLKLLILEVQKKE*
Ga0074046_100000949	F001364	AGGAGG	MLGGLLLVVCVILQFHYHDSIPWYIWLLALIAQCIAFGEPAMRSAAAKKN*