Scaffold Ga0074046_10000061

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000061
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88508
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (67.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000482	Metagenome / Metatranscriptome	1089	Y
F000548	Metagenome / Metatranscriptome	1036	Y
F002944	Metagenome / Metatranscriptome	518	Y
F007540	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_1000006143	F002944	N/A	MKNFLDALLAVIAGNAIYYLLMPHLPPVARHRLFQEDWGLLLDFAICGMIFAAMKYARRHET*
Ga0074046_1000006152	F000548	AGG	MGKEGSERPRWIGIPVRVCAMTFLFTLLSFAVALLLGILGTVVYSQVKHVAPNMTFAYRHIAFPFAITAGAIVLAFSLGMEIRNYRHRKTLAGIERVS*
Ga0074046_1000006176	F000482	N/A	MHFSRAHLAIAIGAASLLVLVFLGYLYWLNNQGPVLARSEERDPLTQMPISITMNPFRDRTIERVANSFIAEMRDGNCRQLLAQWEKDYRKKRADFLCNSEAQHPLISWNLIEWEDRPPLIILHYKGQRYSTPAQDATYKDLFSVTEEKKDSGWTVTKYDSFY*
Ga0074046_100000618	F007540	AGGA	MKLAGLLLMVAGWAIVVAAVALLPSAVARAGFVLAGVATELFGLALAVRSHLVLPAEGE*